TY - JOUR AU - Weber, F. AU - Wagner, V. AU - Rasmussen, S. B. AU - Hartmann, R. AU - Paludan, S. R. PY - 2006 DA - 2006// TI - Double-stranded RNA is produced by positive-strand RNA viruses and DNA viruses but not in detectable amounts by negative-strand RNA viruses JO - J Virol VL - 80 ID - Weber2006 ER - TY - JOUR AU - Gantier, M. P. AU - Williams, B. R. G. PY - 2007 DA - 2007// TI - The response of mammalian cells to double-stranded RNA JO - Cytokine Growth F R VL - 18 ID - Gantier2007 ER - TY - JOUR AU - Kim, Y. AU - Lee, J. H. AU - Park, J. E. AU - Cho, J. AU - Yi, H. AU - Kim, V. N. PY - 2014 DA - 2014// TI - PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator JO - Genes Dev VL - 28 ID - Kim2014 ER - TY - JOUR AU - Chung, H. C. AU - Calis, J. J. A. AU - Wu, X. F. AU - Sun, T. AU - Yu, Y. P. AU - Sarbanes, S. L. PY - 2018 DA - 2018// TI - Human ADAR1 Prevents Endogenous RNA from Triggering Translational Shutdown JO - Cell VL - 172 ID - Chung2018 ER - TY - STD TI - Kim Y, Park J, Kim S, Kim M, Kang MG, Kwak C, Kang M, Kim B, Rhee HW, Kim VN. PKR senses nuclear and mitochondrial signals by interacting with endogenous double-stranded RNAs. Molecular Cell. 2018;71(6):1051–+. ID - ref5 ER - TY - JOUR AU - Dhir, A. AU - Dhir, S. AU - Borowski, L. S. AU - Jimenez, L. AU - Teitell, M. AU - Rotig, A. PY - 2018 DA - 2018// TI - Mitochondrial double-stranded RNA triggers antiviral signalling in humans JO - Nature VL - 560 ID - Dhir2018 ER - TY - JOUR AU - Wang, Y. M. AU - Swiecki, M. AU - McCartney, S. A. AU - Colonna, M. PY - 2011 DA - 2011// TI - dsRNA sensors and plasmacytoid dendritic cells in host defense and autoimmunity JO - Immunol Rev VL - 243 ID - Wang2011 ER - TY - JOUR AU - Kaneko, H. AU - Dridi, S. AU - Tarallo, V. AU - Gelfand, B. D. AU - Fowler, B. J. AU - Cho, W. G. PY - 2011 DA - 2011// TI - DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration JO - Nature VL - 471 ID - Kaneko2011 ER - TY - JOUR AU - Roulois, D. AU - Yau, H. L. AU - Singhania, R. AU - Wang, Y. D. AU - Danesh, A. AU - Shen, S. Y. PY - 2015 DA - 2015// TI - DNA-Demethylating agents target colorectal Cancer cells by inducing viral mimicry by endogenous transcripts JO - Cell. VL - 162 ID - Roulois2015 ER - TY - JOUR AU - Chiappinelli, K. B. AU - Strissel, P. L. AU - Desrichard, A. AU - Li, H. L. AU - Henke, C. AU - Akman, B. PY - 2015 DA - 2015// TI - Inhibiting DNA methylation causes an interferon response in Cancer via dsRNA including endogenous retroviruses JO - Cell. VL - 162 ID - Chiappinelli2015 ER - TY - JOUR AU - Peisley, A. AU - Hur, S. PY - 2013 DA - 2013// TI - Multi-level regulation of cellular recognition of viral dsRNA JO - Cell Mol Life Sci VL - 70 ID - Peisley2013 ER - TY - JOUR AU - Klajn, R. PY - 2014 DA - 2014// TI - Spiropyran-based dynamic materials JO - Chem Soc Rev VL - 43 ID - Klajn2014 ER - TY - JOUR AU - Genovese, M. E. AU - Athanassiou, A. AU - Fragouli, D. PY - 2015 DA - 2015// TI - Photoactivated acidochromic elastomeric films for on demand acidic vapor sensing JO - J Mater Chem A VL - 3 ID - Genovese2015 ER - TY - JOUR AU - Chen, Y. C. AU - Zhu, C. C. AU - Yang, Z. H. AU - Chen, J. J. AU - He, Y. F. AU - Jiao, Y. PY - 2013 DA - 2013// TI - A Ratiometric fluorescent probe for rapid detection of hydrogen sulfide in mitochondria JO - Angew Chem Int Edit VL - 52 ID - Chen2013 ER - TY - JOUR AU - Darwish, T. A. AU - Evans, R. A. AU - James, M. AU - Hanley, T. L. PY - 2011 DA - 2011// TI - Spiropyran-Amidine: a molecular canary for visual detection of carbon dioxide gas JO - Chem-Eur J VL - 17 ID - Darwish2011 ER - TY - JOUR AU - Wan, S. L. AU - Zheng, Y. AU - Shen, J. AU - Yang, W. T. AU - Yin, M. Z. PY - 2014 DA - 2014// TI - “On-off-on” switchable sensor: a fluorescent Spiropyran responds to extreme pH conditions and its bioimaging applications JO - Acs Appl Mater Inter VL - 6 ID - Wan2014 ER - TY - JOUR AU - Natali, M. AU - Soldi, L. AU - Giordani, S. PY - 2010 DA - 2010// TI - A photoswitchable Zn (II) selective spiropyran-based sensor JO - Tetrahedron. VL - 66 ID - Natali2010 ER - TY - JOUR AU - Shao, N. AU - Wang, H. AU - Gao, X. D. AU - Yang, R. H. AU - Chan, W. H. PY - 2010 DA - 2010// TI - Spiropyran-based fluorescent anion probe and its application for urinary pyrophosphate detection JO - Anal Chem VL - 82 ID - Shao2010 ER - TY - JOUR AU - Xie, X. J. AU - Mistlberger, G. AU - Bakker, E. PY - 2012 DA - 2012// TI - Reversible photodynamic chloride-selective sensor based on photochromic Spiropyran JO - J Am Chem Soc VL - 134 ID - Xie2012 ER - TY - JOUR AU - Li, Y. H. AU - Duan, Y. AU - Zheng, J. AU - Li, J. S. AU - Zhao, W. J. AU - Yang, S. PY - 2013 DA - 2013// TI - Self-assembly of graphene oxide with a silyl-appended Spiropyran dye for rapid and sensitive colorimetric detection of fluoride ions JO - Anal Chem VL - 85 ID - Li2013 ER - TY - JOUR AU - Sylvia, G. M. AU - Heng, S. AU - Bachhuka, A. AU - Ebendorff-Heidepriern, H. AU - Abell, A. D. PY - 2018 DA - 2018// TI - A spiropyran with enhanced fluorescence: a bright, photostable and red-emitting calcium sensor JO - Tetrahedron. VL - 74 ID - Sylvia2018 ER - TY - JOUR AU - Andersson, J. AU - Li, S. AU - Lincoln, P. AU - Andreasson, J. PY - 2008 DA - 2008// TI - Photoswitched DNA-binding of a photochromic spiropyran JO - J Am Chem Soc VL - 130 ID - Andersson2008 ER - TY - JOUR AU - Hammarson, M. AU - Andersson, J. AU - Li, S. AU - Lincoln, P. AU - Andreasson, J. PY - 2010 DA - 2010// TI - Molecular AND-logic for dually controlled activation of a DNA-binding spiropyran JO - Chem Commun VL - 46 ID - Hammarson2010 ER - TY - JOUR AU - Hammarson, M. AU - Nilsson, J. R. AU - Li, S. AU - Lincoln, P. AU - Andreasson, J. PY - 2014 DA - 2014// TI - DNA-binding properties of amidine-substituted spiropyran photoswitches JO - Chemistry. VL - 20 ID - Hammarson2014 ER - TY - JOUR AU - Brieke, C. AU - Heckel, A. PY - 2013 DA - 2013// TI - Spiropyran Photoswitches in the context of DNA: synthesis and photochromic properties JO - Chem-Eur J. VL - 19 ID - Brieke2013 ER - TY - JOUR AU - Ihmels, H. AU - Mattay, J. AU - May, F. AU - Thomas, L. PY - 2013 DA - 2013// TI - Photoswitchable DNA-binding properties of a photochromic spirooxazine derivative JO - Org Biomol Chem VL - 11 ID - Ihmels2013 ER - TY - JOUR AU - Young, D. D. AU - Deiters, A. PY - 2008 DA - 2008// TI - Light-regulated RNA-small molecule interactions JO - Chembiochem. VL - 9 ID - Young2008 ER - TY - JOUR AU - Zhang, X. AU - Zhang, J. J. AU - Ying, Y. L. AU - Tian, H. AU - Long, Y. T. PY - 2014 DA - 2014// TI - Single molecule analysis of light-regulated RNA: spiropyran interactions JO - Chem Sci VL - 5 ID - Zhang2014 ER - TY - JOUR AU - Lee, K. AU - Cui, Y. AU - Lee, L. P. AU - Irudayaraj, J. PY - 2014 DA - 2014// TI - Quantitative imaging of single mRNA splice variants in living cells JO - Nat Nanotechnol VL - 9 ID - Lee2014 ER - TY - JOUR AU - Gliddon, H. D. AU - Howes, P. D. AU - Kaforou, M. AU - Levin, M. AU - Stevens, M. M. PY - 2016 DA - 2016// TI - A nucleic acid strand displacement system for the multiplexed detection of tuberculosis-specific mRNA using quantum dots JO - Nanoscale. VL - 8 ID - Gliddon2016 ER - TY - JOUR AU - Nie, W. Y. AU - Wang, Q. AU - Yang, X. H. AU - Zhang, H. AU - Li, Z. P. AU - Gao, L. PY - 2017 DA - 2017// TI - High sensitivity surface plasmon resonance biosensor for detection of microRNA based on gold nanoparticles-decorated molybdenum sulfide JO - Anal Chim Acta VL - 993 ID - Nie2017 ER - TY - JOUR AU - Roark, B. AU - Tan, J. A. AU - Ivanina, A. AU - Chandler, M. AU - Castaneda, J. AU - Kim, H. S. PY - 2016 DA - 2016// TI - Fluorescence blinking as an output signal for biosensing JO - Acs Sensors VL - 1 ID - Roark2016 ER - TY - JOUR AU - Sato, T. AU - Sato, Y. AU - Nishizawa, S. PY - 2016 DA - 2016// TI - Triplex-forming peptide nucleic acid probe having Thiazole Orange as a base surrogate for fluorescence sensing of double-stranded RNA JO - J Am Chem Soc VL - 138 ID - Sato2016 ER - TY - JOUR AU - Tyagi, S. AU - Kramer, F. R. PY - 1996 DA - 1996// TI - Molecular beacons: probes that fluoresce upon hybridization JO - Nat Biotechnol VL - 14 ID - Tyagi1996 ER - TY - STD TI - Koh Y, Kim YA, Kim K, Sim JA, Yoon SS, Park SM, Yun YH. Decitabine is superior to cytotoxic chemotherapy in elderly acute myeloid leukemia patients in terms of medical source utilization and cost-effectiveness without negatively impacting survival outcomes. Blood. 2016;128(22):2381. ID - ref35 ER - TY - JOUR AU - Hammarson, M. AU - Nilsson, J. R. AU - Li, S. M. AU - Beke-Somfai, T. AU - Andreasson, J. PY - 2013 DA - 2013// TI - Characterization of the thermal and Photoinduced reactions of photochromic Spiropyrans in aqueous solution JO - J Phys Chem B VL - 117 ID - Hammarson2013 ER - TY - JOUR AU - Dickerson, R. E. AU - Drew, H. R. AU - Conner, B. N. AU - Wing, R. M. AU - Fratini, A. V. AU - Kopka, M. L. PY - 1982 DA - 1982// TI - The anatomy of a-DNA, B-DNA, and Z-DNA JO - Science. VL - 216 ID - Dickerson1982 ER - TY - JOUR AU - Kapuscinski, J. PY - 1990 DA - 1990// TI - Interactions of nucleic-acids with fluorescent dyes - spectral properties of condensed complexes JO - J Histochem Cytochem VL - 38 ID - Kapuscinski1990 ER - TY - JOUR AU - Inclan, M. AU - Guijarro, L. AU - Pont, I. AU - Frias, J. C. AU - Rotger, C. AU - Orvay, F. PY - 2017 DA - 2017// TI - Binding mode and selectivity of a Scorpiand-like polyamine ligand to single- and double-stranded DNA and RNA: metal- and pH-driven modulation JO - Chem-Eur J. VL - 23 ID - Inclan2017 ER - TY - JOUR AU - Kumar, C. V. AU - Asuncion, E. H. PY - 1993 DA - 1993// TI - DNA-binding studies and site-selective fluorescence sensitization of an Anthryl probe JO - J Am Chem Soc VL - 115 ID - Kumar1993 ER - TY - JOUR AU - Kerwin, S. M. PY - 2000 DA - 2000// TI - Nucleic acids: structures, properties, and functions by victor a. Bloomfield, Donald M. Crothers, and Ignacio Tinoco, Jr., with contributions from John E. Hearst, David E. Wemmer, Peter a. Kollman, and Douglas H. Turner. University science books, Sausalito, CA. 2000. Ix + 794 pp. 17 × 25 cm. ISBN 0-935702-49-0. $85.00 JO - J Med Chem VL - 43 ID - Kerwin2000 ER - TY - JOUR AU - Horowitz, E. D. AU - Hud, N. V. PY - 2006 DA - 2006// TI - Ethidium and proflavine binding to a 2 ′,5 ′-linked RNA duplex JO - J Am Chem Soc VL - 128 ID - Horowitz2006 ER - TY - JOUR AU - Tansil, N. C. AU - Xie, H. AU - Xie, F. AU - Gao, Z. PY - 2005 DA - 2005// TI - Direct detection of DNA with an Electrocatalytic threading Intercalator JO - Anal Chem VL - 77 ID - Tansil2005 ER - TY - JOUR AU - Starčević, K. AU - Karminski-Zamola, G. AU - Piantanida, I. AU - Žinić, M. AU - Šuman, L. AU - Kralj, M. PY - 2005 DA - 2005// TI - Photoinduced switch of a DNA/RNA inactive molecule into a classical Intercalator JO - J Am Chem Soc VL - 127 ID - Starčević2005 ER - TY - STD TI - Bai Y, Greenfeld M, Travers KJ, Chu VB, Lipfert J, Doniach S, Herschlag D. Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids. J Am Chem Soc. 2007;129(48):14981–88. ID - ref45 ER - TY - JOUR AU - Sun, L. Z. AU - Zhang, D. AU - Chen, S. J. PY - 2017 DA - 2017// TI - Theory and modeling of RNA structure and interactions with metal ions and small molecules JO - Annu Rev Biophys VL - 46 ID - Sun2017 ER - TY - JOUR AU - Kirmizialtin, S. AU - Pabit, S. A. AU - Meisburger, S. P. AU - Pollack, L. AU - Elber, R. PY - 2012 DA - 2012// TI - RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations JO - Biophys J VL - 102 ID - Kirmizialtin2012 ER - TY - JOUR AU - Hegde, A. H. AU - Seetharamappa, J. PY - 2014 DA - 2014// TI - Fluorescence and circular dichroism studies on binding and conformational aspects of an anti-leukemic drug with DNA JO - Mol Biol Rep VL - 41 ID - Hegde2014 ER - TY - JOUR AU - Sinha, R. AU - Islam, M. M. AU - Bhadra, K. AU - Kumar, G. S. AU - Banerjee, A. AU - Maiti, M. PY - 2006 DA - 2006// TI - The binding of DNA intercalating and non-intercalating compounds to A-form and protonated form of poly(rC)center dot poly(rG): spectroscopic and viscometric study JO - Bioorgan Med Chem VL - 14 ID - Sinha2006 ER - TY - JOUR AU - Jonsson, F. AU - Beke-Somfai, T. AU - Andreasson, J. AU - Norden, B. PY - 2013 DA - 2013// TI - Interactions of a photochromic spiropyran with liposome model membranes JO - Langmuir VL - 29 ID - Jonsson2013 ER - TY - JOUR AU - Miskolczy, Z. AU - Biczok, L. PY - 2011 DA - 2011// TI - Photochromism in cucurbit[8]uril cavity: inhibition of hydrolysis and modification of the rate of Merocyanine-Spiropyran transformations JO - J Phys Chem B VL - 115 ID - Miskolczy2011 ER - TY - JOUR AU - Nilsson, J. R. AU - Carvalho, C. P. AU - Li, S. M. AU - Silva, J. P. AU - Andreasson, J. AU - Pischel, U. PY - 2012 DA - 2012// TI - Switching properties of a Spiropyran-cucurbit[7]uril supramolecular assembly: usefulness of the anchor approach JO - Chemphyschem. VL - 13 ID - Nilsson2012 ER - TY - JOUR AU - Kaminskas, E. AU - Farrell, A. AU - Abraham, S. AU - Baird, A. AU - Hsieh, L. S. AU - Lee, S. L. PY - 2005 DA - 2005// TI - Approval summary: Azacitidine for treatment of myelodysplastic syndrome subtypes JO - Clin Cancer Res VL - 11 ID - Kaminskas2005 ER - TY - JOUR AU - Nelson, P. N. AU - Hooley, P. AU - Roden, D. AU - Davari Ejtehadi, H. AU - Rylance, P. AU - Warren, P. PY - 2004 DA - 2004// TI - Human endogenous retroviruses: transposable elements with potential? JO - Clin Exp Immunol VL - 138 ID - Nelson2004 ER - TY - JOUR AU - Xiong, Y. AU - Rivera-Fuentes, P. AU - Sezgin, E. AU - Vargas Jentzsch, A. AU - Eggeling, C. AU - Anderson, H. L. PY - 2016 DA - 2016// TI - Photoswitchable Spiropyran dyads for biological imaging JO - Org Lett VL - 18 ID - Xiong2016 ER - TY - JOUR AU - Asanuma, H. AU - Liang, X. AU - Nishioka, H. AU - Matsunaga, D. AU - Liu, M. AU - Komiyama, M. PY - 2007 DA - 2007// TI - Synthesis of azobenzene-tethered DNA for reversible photo-regulation of DNA functions: hybridization and transcription JO - Nat Protoc VL - 2 ID - Asanuma2007 ER - TY - JOUR AU - Dohno, C. AU - Uno, S. N. AU - Nakatani, K. PY - 2007 DA - 2007// TI - Photoswitchable molecular glue for DNA JO - J Am Chem Soc VL - 129 ID - Dohno2007 ER - TY - STD TI - Deiana M, Pokladek Z, Olesiak-Banska J, Mlynarz P, Samoc M, Matczyszyn K. Photochromic switching of the DNA helicity induced by azobenzene derivatives. Sci Rep-Uk. 2016;6:28605. ID - ref58 ER - TY - JOUR AU - Biswas, M. AU - Burghardt, I. PY - 2014 DA - 2014// TI - Azobenzene Photoisomerization-induced destabilization of B-DNA JO - Biophys J VL - 107 ID - Biswas2014 ER - TY - JOUR AU - Goldau, T. AU - Murayama, K. AU - Brieke, C. AU - Asanuma, H. AU - Heckel, A. PY - 2015 DA - 2015// TI - Azobenzene C-nucleosides for Photocontrolled hybridization of DNA at room temperature JO - Chem-Eur J. VL - 21 ID - Goldau2015 ER - TY - JOUR AU - Cahova, H. AU - Jaschke, A. PY - 2013 DA - 2013// TI - Nucleoside-based Diarylethene Photoswitches and their facile incorporation into Photoswitchable DNA JO - Angew Chem Int Edit. VL - 52 ID - Cahova2013 ER - TY - JOUR AU - Mondal, P. AU - Biswas, M. AU - Goldau, T. AU - Heckel, A. AU - Burghardt, I. PY - 2015 DA - 2015// TI - In search of an efficient Photoswitch for functional RNA: design principles from a microscopic analysis of Azobenzene-linker-RNA dynamics with different linkers JO - J Phys Chem B VL - 119 ID - Mondal2015 ER - TY - JOUR AU - Rastadter, D. AU - Biswas, M. AU - Burghardt, I. PY - 2014 DA - 2014// TI - Molecular dynamics study of the controlled destabilization of an RNA hairpin structure by a covalently attached Azobenzene switch JO - J Phys Chem B VL - 118 ID - Rastadter2014 ER - TY - JOUR AU - Szymański, W. AU - Beierle, J. M. AU - Kistemaker, H. A. V. AU - Velema, W. A. AU - Feringa, B. L. PY - 2013 DA - 2013// TI - Reversible Photocontrol of biological systems by the incorporation of molecular Photoswitches JO - Chem Rev VL - 113 ID - Szymański2013 ER - TY - JOUR AU - Baranovsky, S. F. AU - Bolotin, P. A. AU - Evstigneev, M. P. AU - Chernyshev, D. N. PY - 2009 DA - 2009// TI - Interaction of ethidium bromide and caffeine with DNA in aqueous solution JO - J Appl Spectrosc VL - 76 ID - Baranovsky2009 ER - TY - JOUR AU - Nwokeoji, A. O. AU - Kilby, P. M. AU - Portwood, D. E. AU - Dickman, M. J. PY - 2017 DA - 2017// TI - Accurate quantification of nucleic acids using Hypochromicity measurements in conjunction with UV spectrophotometry JO - Anal Chem VL - 89 ID - Nwokeoji2017 ER -